FLUENT Verification Project
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genetic circuits
STAMINA in C++: Modernizing an Infinite-State Probabilistic Model Checker
Improving the scalability of probabilistic model checking (PMC) tools is crucial to the verification of real-world system designs. The …
Joshua Jeppson
,
Matthias Volk
,
Bryant Israelsen
,
Riley Roberts
,
Andrew Williams
,
Lukas Buecherl
,
Chris J. Myers
,
Hao Zhang
,
Chris Winstead
,
Zhen Zhang
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Code
DOI
Cycle and Commute: Rare-Event Probability Verification for Chemical Reaction Networks
Rare events are known to potentially cause pathological behavior in biochemical reaction systems. It is important to understand the …
Landon Taylor
,
Bryant Israelsen
,
Zhen Zhang
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Code
Importance Sampling Techniques for the Analysis of Genetic Circuits
Genetic circuits have been identified as a promising technology that could revolutionize several areas, including biofuels, …
Payton J. Thomas
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Code
Efficient Trace Generation for Rare-Event Analysis in Chemical Reaction Networks
Rare events are known to potentially cause pathological behavior in biochemical reaction systems. It is important to understand the …
Bryant Israelsen
,
Landon Taylor
,
Zhen Zhang
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Code
DOI
Stochastic Hazard Analysis of Genetic Circuits in iBioSim and STAMINA
Rare events are of particular interest in synthetic biology because rare biochemical events may be catastrophic to a biological system …
Mohammad Ahmadi
,
Payton J. Thomas
,
Lukas Buecherl
,
Chris Winstead
,
Chris J. Myers
,
Hao Zheng
,
Equal contribution
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DOI
Stochastic Hazard Analysis of Genetic Circuits in iBioSim and STAMINA
In synthetic biology, combinational circuits are used to program cells for various new applications like biosensors, drug delivery …
Lukas Buecherl
,
Riley Roberts
,
Pedro Fontanarrosa
,
Payton J. Thomas
,
Jeanet Mante
,
Zhen Zhang
,
Chris J. Myers
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